Showing 15 results for Genes
M Saeedi, S Bakhshandeh Nosrat, A Moradi, Sm Hedayat Mofidi, N Behnampoor,
Volume 3, Issue 1 (4-2009)
Abstract
Abstract Background and objectives: Infection has a Leading role in pregnancy. Cytomegalovirus (CMV), listeria and Toxoplasma are the most common causes of infection in human. Based on the previous researches, about 15-25 percent of being infected during pregnancy leads to some complications such as abortion, fetal death, early labor and etc. This study was designed to determine the seroprevalence of Cytomegalovirus (CMV), Toxoplasma gondii and Listeria moncytogenes among pregnant women in Gorgan, north of Iran (2005-2006). Material and Methods: we conducted this Simple randomized study on 118 unsuccessful pregnant woman and 99 successful ones referred to Deziani hospital in Gorgan. We assayed both IgG and IgM antibodies for CMV and Toxo by Elisa and IFA method for Listeria. In addition, we fill out a Check list and then use SPSS soft ware, chi square to analyze the data. Results: The frequency of IgG for CMV and Toxo is 89.9% and 45.5% in successful pregnant women and 77.1% and 44.1% for unsuccessful pregnant women (P=0.41, P=0.01). IgM frequency for CMV and Toxo is 14.1% and 46.5% in successful women and 30.5 and 21.7% in unsuccessful ones. (P=0.003, P=0.002)Total frequency (IgG, IgM) for Listeria is 7.62% and %3.03 in successful and unsuccessful women, respectively. There is a significant relation between abortion and IgM titer against Toxoplasma in successful and unsuccessful groups. (P=0.003).This relation is true for total antibody titer against Listeria (P=0.003). Conclusion: Because of high titer of antibodies against CMV, Toxo and Listeria in unsuccessful pregnant women, suffering from these agents during pregnancy may result in abortion and fetal death. Hence, we recommend to hold some preventive and educational program and also to assay antibodies against theses agents. Key words: Listeria moncytogenes, Cytomegalovirus (CMV), Toxoplasma gondii, success and non-success pregnancy, Serology, Gorgan
Jafarpur M, Nazemi A, Mirzaee A, Rahbar Farzamee Hagh S,
Volume 5, Issue 2 (10-2011)
Abstract
Abstract Background and objectives: Group A Streptococcus (GAS) strains have been identified by serologic methods based on surface protein antigens, T and M. Accordingly, different serotypes have been reported worldwide. Recently, the previous out of date procedures have been replaced by N-terminal emm gene sequence, which has been used in identifying more than 150 emm types. We aimed to determine the prevalence of emm types and phenotypes resistance to erythromycin among streptococci isolated from the throat in north of Iran. Material and Methods: 50 GAS isolates from sore throat of patients referred to a few local hospitals in Tonekabon, Ramsar, and Chalus in northwest of Iran (2010-2011), by using blood agar, bacitracin sensitivity test, PYR test and agglutination by specific antiserum. Antibiotic resistance of the isolates was determined by the discs branded by Iranian Padtan Teb Company, using Kirby Bauer Test, and analyzed by CLSI standards. The mechanism of resistance to erythromycin was evaluated by Double Disk Diffusion Test in the presence of erythromycin and clindamycin. emm gene of all isolates were reproduced and their PCR products sequenced by the Korean Macrogen company. To determine the emm types, using BLAST2.0 program (National Center for Biotechnology Information, available in WWW.ncbi.nlm.nih.gov / BLAST), and the emm gene sequences were compared with sequences in the gene bank. Results: we identified Four different types of emm, including e mm5 (26 52 %), emm12 (12 24%), emm79 (6 % 12) and emm86 (6 % 12). All beta lactam antibiotics have inhibitory effect on isolates, while18% of isolates (9 of 50) are resistant to erythromycin. The most common resistance phenotype is cMLSB (% 66.6) and the next one is phenotype M (% 33.3), but phenotype iMLSB is not observed in none of the isolates. Twelve percent (6cases) of isolates are resistant to clindamycin. Conclusion: The results of present study show different types of GAS than those reported worldwide. The emergences of emm86 in pharyngitis and erythromycin resistance are the two valuable findings of this research. Keywords:Streotococcus pyogenes,erythromycin,cMLSB,iMLSB
Kargar, M, Ebrahimi, E, Amini, J, Najafi, A, Kheirkhah, B,
Volume 8, Issue 4 (1-2015)
Abstract
Abstract
Background and Objective: Listeria monocytogenes is a bacterium transferred by foods and is the agent of many sporadic and epidemic diseases in humans. This study aimed to investigate the prevalence of L. monocytogenes and to determinine their antibiotic resistance profile in red meats.
Material and Methods: this cross-sectional study was performed on 400 red meat samples obtained from industrial slaughterhouses placed in Kerman, Iran. First, the samples were enriched with Simultaneous Enrichment Broth (SEB), and then plated onto Palcam agar and Tryptic Soy Broth Yeast Extract Broth (TSAYE). After identification of the isolates based on biochemical tests and PCR, the isolates were checked for their antibiotic resistance profile using disk Diffusion
Results: of 400 samples, 12 samples (3%) were contaminated with different species of Listeria. Using PCR, hly gene was recognized in eight samples (2%) of L. monocytogenes. Furthermore, there was a significant difference in isolation rate of lamb samples compared to cow ones. While all of the isolates were resistant to clindamycin, amikacin and chloramphenicol, they were sensitive to penicillin.
Conclusion: in spite of low rate of infection in red meat samples in Kerman city, due to high risk of Listeria contamination in red meats, we recommend applying a routine screening to identify this bacterium in our county.
Keywords: Listeria Monocytogenes, Hly Gene, Red Meat, Antibiotic, Kerman
Yaghoobi Avini, M, Daraei, M, Ebrahimipour, Gh,
Volume 8, Issue 5 (1-2015)
Abstract
Abstract Background and Objective: The bacteria living in the specific ecological conditions are among the most promising antimicrobial producers. This study aimed at isolating antimicrobial producing bacteria from soils contaminated with crude oil. Material and Methods: the samples were obtained from crude oil contaminated soils around Dezful located in Khuzestan province, Iran, and antimicrobial producing bacteria were isolated using disc diffusion and cross streak culture. Then, the best bacterium was selected and its antimicrobial potency was studied against indicator microorganisms. The isolate was also characterized based on biochemical properties and phylogenetic analysis. Results: based on the results, the highest antimicrobial activity of isolated bacterium was related to Candida albicans, Aspergillus niger, Bacillus subtilis, E. coli and Klebsiella pneumonia. An intermediate effect was determined against Serratia marcesens and Staphylococcus aureus, whereas no effect was observed against three strains of Enterococcus. Using biochemical characteristics and phenotypic traits, the isolate was identified as Alcaligenes faecalis. Conclusion: given that the isolate has broad spectrum activity against a various range of microorganisms and in comparison with some antimicrobial compounds produced by other Alcaligenes species, it seems the novelty of this antimicrobial compound. Keywords: Antimicrobial Compound, Oil Contaminated Soil, Alcaligenes faecalis
H Haghighatfard, Y Yazdani, Y.,
Volume 9, Issue 1 (4-2015)
Abstract
Abstract
Background and Objective: the inhibition of tumor-associated angiogenesis can significantly reduce the tumor proliferation. The basic fibroblast growth factor (bFGF), an important angiogenic factor, is considered as a potential therapeutic target for cancer therapy. The purpose of this study was evaluating, designing and construction of new recombinant DNA molecule in order to have efficient expression of a fusion protein consisting of the bFGF and immunodominant epitopes of Pseudomonas toxin.
Material and Methods: Different types of peptide linker, codon adaptation index (CAI) and adding signal peptide were considered in designing of immunogenic coding sequence. After software evaluation, the recombinant DNA molecule was ordered in the puc57 cloning vector. Then, coding sequence inserted into the multiple cloning site of pET28-a plasmid. Finally, PCR and enzymatic digestion tests were done for evaluation of recombinant expression vector.
Results: Optimization of DNA sequence, codon adaptation index (CAI) increased from 0.69 to 0.83 and GC content decreased from 61 to 54.77. The presence of 1214-bp PCR product and 1029-bp one obtaining from enzymatic digestion confirmed the correction of the cloning process.
Conclusion: According to the previous studies, it is the first work for designing, optimizing and synthesis of recombinant DNA consisting of bFGF and immunodominant epitopes of Pseudomonas toxin.
Keywords: Tumor angiogenesis, immunodominant epitopres of Pseudomonas toxin, Fibroblast growth factor 2, DNA 2 software
Mohammadpourkanzaq, H, Noroozi, M, Mahmoudi, R, Mohammadpoorasl, A, Zavoshy, R, Asadinadari, M,
Volume 9, Issue 2 (7-2015)
Abstract
Background and Objective: It has been proved that plant essential oils have antimicrobial effects. Stachys Lavandulifolia Vachl is a medicinal plant growing wild in many parts of Iran, and is used as a brewed drink to treat some diseases.
Material and Methods: Aerial parts of Stachys lavandulifolia Vachl at flowering were collected from the Sabalan mountainous area of Ardabil and its essential oil was extracted using a Clevenger-type apparatus. A GC/MS machine was used to identify the chemical constituents of this Essential oil. We used microdilution method to determine the minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) of Essential oil against Listeria Monocytogenes ATCC19118 bacteria.
Result: Sixteen chemical compounds were identified in this essential oil. Of these, γ-terpinene (28%), Phenol (18.16%), Myrcene (17.87%), and α-Pinen (12.7%) were the major ones. The MIC and MBC of the essential oil for Listeria Monocytogenes bacteria were 600 and 2400 ppm, respectively.
Conclusion: Results showed that the Monoterpene and Sesquiterpene groups are the main constituents of this essential oil having bactericidal effects against Listeria Monocytogenes bacteria.
Keywords: Essential Oil, Stachys Lavandulifolia, Listeria Monocytogenes
Farzad Nazem, Malihe Ardakani, Mohammad Reza Gholami, Kamal Ranjbar, Afshin Nazari,
Volume 10, Issue 5 (9-2016)
Abstract
ABSTRACT
Background and Objective: Scientific evidence reveals that the density of skeletal muscle microcirculations decreases in the patients with chronic heart failure. Therefore, this study aimed to determine the impact of submaximal aerobic exercise training on restoration of fast/slow-twitch muscle fibers microcirculation in rats with myocardial infarction.
Methods: In this experimental study, 30 male infarcted Wistar rats were randomly divided into three groups of sham (N=10), control (N=10) and exercise (N=10), four weeks after surgery (blockage of anterior descending artery). Daily aerobic exercise included running on a treadmill for 10 weeks (5 times a week) at a speed of 17 m/min within 10 to 50 minutes. The animals were anesthetized and then sacrificed with chloroform, 48 hours after the last training session. The microcirculation density of soleus (SOL) and gastrocnemius (Gw) muscles was evaluated by immunohistochemistry assay.
Results: Capillary density and capillary to SOL muscle fiber ratio significantly increased in response to exercise training. However, capillary density, capillary to Gw muscle fiber ratio and Gw muscle arteriolar density of Wistar rats with chronic heart failure were not significantly affected by the exercise program. Moreover, arteriolar density of Gw muscle increased significantly after the exercise program.
Conclusion: The ten-week aerobic exercise might non-uniformly improve the SOL and Gw muscles microcirculation in rats with chronic heart failure by increasing capillary density and capillary to fiber ratio in the SOL muscle and increasing the arteriolar density of the Gw muscle.
Keywords: Heart Failure, Angiogenesis, Exercise.
Leili Komeilifard, Vahid Hemayat Khahjahromi ,
Volume 10, Issue 6 (11-2016)
Abstract
ABSTRACT
Background and Objectives: Diabetes is one of the most common endocrine disorders, which is associated with changes in testicular tissue. The present study investigated therapeutic and prophylactic properties of bitter orange (Citrus aurantium) juice on testicular tissue and spermatogenesis process.
Methods: Forty streptozotocin-induced diabetic Wistar rats aged three months with mean weight of 170-200 g were divided into 4 groups including 1) control group, 2) diabetic control group, 3) diabetic group receiving 100mg/kg C. aurantium extract and 4) diabetic group receiving 200 mg/kg C. aurantium extract. The extract was administered to the rats for 56 days by gavage. After this period, the rats were anesthetized with ether and then their testes were fixed in 10% formalin for sample preparation. The testicular tissue was examined by haematoxylin and eosin staining under a light microscope with 10 and 40 magnifications. The mean number of Leydig and Sertoli cells, spermatogonia, spermatocytes and spermatids were calculated.
Results: A significant decrease was observed in mean weight of left testis in diabetic rats compared to that of controls (P≤0.05). The mean weight of testes showed no significant difference in diabetic rats treated with 200 mg/kg of extract compared with the control group. Diabetes reduced the number of spermatogonia, spermatocytes, spermatids and Sertoli cells. The number of cells increased significantly in the diabetic group receiving 200 mg/kg of extract. The spermatocytes and spermatids in both groups treated with the extract increased significantly.
Conclusion: This study shows the positive effect of bitter orange extract on complications of diabetes in testicular tissue. Therefore, this extract could be used for therapeutic purposes.
Keywords: diabetes, bitter orange juice, spermatogenesis, testis, rat
Majid Komijani , Majid Bouzari , Fateh Rahimi ,
Volume 11, Issue 2 (3-2017)
Abstract
ABSTRACT
Background and Objective: Escherichia coli is one of the most common causes of hospital-acquired infections. Extended-spectrum β-lactamase (ESBL)-producing E. coli strains are resistant to third-generation cephalosporins. The three main genes involved in ESBL production are TEM, SHV and CTX-M. Detection of ESBL-producing E. coli is of importance for infection control, reduction of excessive antibiotic use and epidemiological surveillance. This study aimed to detect ESBL-producing E. coli strains isolated from wound infections using phenotypic and molecular methods.
Methods: During 2013- early 2015, 86 strains were collected from three hospitals in Isfahan, Iran. Antibiotic susceptibility testing was done using ceftazidime and ceftazidime + clavulanic acid discs. Polymerase chain reaction was used for the detection of the three resistance genes.
Results: The resistance genes SHV, CTX-M and TEM were detected in 49 isolates (56.9%). In addition, 39 isolates (45%) were ESBL-producing strains. According to the results, 5 (5.8%), 14 (16.2%), 19 (22%) and 11 (12.7%) isolates contained the SHV, CTX-M, TEM and CTX-M + TEM genes, respectively. The frequency of CTX and TEM were significantly higher than that of SHV gene (P <0.05). Most of the isolated bacteria were resistant to cefazolin and sensitive to nitrofurantoin.
Conclusions: There is a difference between the frequency of ESBL-positive isolates reported in the phenotypic and genotypic methods, which could be due to the lower sensitivity of the phenotypic method and impact of environmental factors on the emergence of antibiotic resistance.
Keywords: Antibiotic resistance genes, ESBL, TEM, SHV, CTX-M, Escherichia coli.
Bahareh Charmi Far , Saman Mahdavi,
Volume 11, Issue 5 (9-2017)
Abstract
ABSTRACT
Background and Objectives: Several virulence factors are involved in the pathogenesis of Staphylococcus aureus. Surface proteins such as collagen binding proteins (Cna) and fibronectin-binding proteins (FnBP) are important factors in adhesion and invasion of S. aureus. The aim of this study was to evaluate the frequency of adherence genes cna, fnbA and fnbB S. aureus isolates from traditional cheese.
Methods: All 22 isolates tested were identified as S. aureus. The isolates were tested for the presence of adherence genes cna, fnbA and fnbB using specific primers in polymerase chain reaction assay.
Results: Six isolates (27.27%) were positive for the can gene. Of the 22 isolates studied, one isolate was positive for fnbA and one was positive for the fnbB. Co-presence of the genes examined was not observed in any of the isolates.
Conclusion: The results indicate the weak biofilm formation ability of the S. aureus isolates from traditional cheese.
Keywords: Staphylococcus aureus, Biofilm, Genes, Cheese.
Hamid Asadzadeh Aghdaei , Zahra Pezeshkian, Meghdad Abdollahpour-Alitappeh , Ehsan Nazemalhosseini Mojarad , Mohammad Reza Zali,
Volume 12, Issue 4 (7-2018)
Abstract
ABSTRACT
Colorectal cancer remains a leading cause of morbidity and mortality worldwide. Most colorectal cancers begin as a growth of tissue called a polyp, some types of which can change into cancer over the course of several years. Angiogenesis, the formation of new blood vessels, is known to play a key role in the initiation, growth and progression of polyp and colorectal cancer. In this review, we discuss the mechanisms involved in colorectal cancer and polyp angiogenesis.
Keywords: Colorectal Neoplasms, Polyps, Angiogenesis
Fatemeh Asadi, Hamedreza Goodarzi, Javad Zahiri, Mojtaba Jafarinia,
Volume 16, Issue 1 (1-2022)
Abstract
Coma is a state of prolonged
unconsciousness. Some coma cases result from inherited disorders such as fatty-acid β-oxidation disorder, acute intermittent porphyria (due to mutations in genes
CPT I, CPTII and
ACADM), urea cycle defects (due to mutation in
OTC gene), organic acidurias, mitochondrial diseases and familial hemiplegic migraine (due to mutations in
CACNA1A, ATP1A2 and
SCN1A). The evaluation of familial cases of coma or sporadic coma can be performed using next generation sequencing (NGS), a
high-throughput sequencing technique that can sequence an entire genome in a single reaction. This technique has been widely applied in the genetic diagnosis of diseases. In this review, we describe some genes associated with coma or recurrent coma and discuss the role of NGS in detection of these genes.
Farzane Maryam, Poozesh Vahid, Atefe Amirahmadi, Fatemeh Salimi,
Volume 17, Issue 3 (5-2023)
Abstract
Background and objectives: Foodborne pathogens can significantly affect the public health and cause medical, social, and economic burden. Listeria monocytogenes, Salmonella enterica, and Yersinia enterocolitica are important foodborne pathogens that can cause various diseases. Plant-derived compounds are promising bioactive substances with inhibitory effects against bacteria. Perovskia abrotanoides Kar. is a medical plant with broad therapeutic activities. In the present study, we aimed to investigate the inhibitory effects of P. abrotanoides extracts against some foodborne pathogens.
Methods: Flowering branches of P. abrotanoides were collected in 2018 and 2019 from three different habitats in the eastern Alborz Mountains, Iran. The antimicrobial activity of the extracts was evaluated using the agar well diffusion test. The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) of the extracts were determined against L. monocytogenes, S. enterica, and Y. enterocolitica. In addition, the antioxidant activity of the extracts was investigated by the DPPH test.
Results: The lowest MIC (200 µg/ml) and MBC (400 µg/ml) values against Y. enterocolitica were related to the ethyl acetate extract of plants collected from habitat 1 in 2019. The lowest MIC (50 µg/ml) and MBC (400 µg/ml) values against L. monocytogenes were related to the dichloromethane extract of plants collected from habitat 1 in 2019. All extracts showed antioxidant properties. Results of one-way ANOVA indicated that the DPPH scavenging activity of extracts from plants collected in 2019 was greater than that of those collected in 2018. In most cases, the methanol and ethyl acetate extracts showed more radical scavenging potential.
Conclusion: It seems that P. abrotanoides is a rich source of antimicrobial and antioxidant compounds with great potential for use in the pharmaceutical and food industries.
Afrooz Daneshparvar , Iman Jamhiri , Vahid Razban, Jafar Fallahi , Nasrin Hamidizadeh , Behnam Moghtaderi , Mehdi Dianatpour ,
Volume 18, Issue 5 (9-2024)
Abstract
Background: A rare heterozygous DYRK1B mutation (R102C) recently linked to a familial form of metabolic syndrome prompted this study to introduce the R102C mutation into the mouse DYRK1B gene, utilizing recombinant lentiviruses for long-term gene expression.
Methods: In the present fundamental study, the DYRK1B R102C mutation was generated via Overlap Extension-PCR (OE-PCR) and inserted into the LeGO-iG2 transfer vector with a GFP marker. Recombinant lentiviruses were produced by co-transfection of the transfer vector carrying DYRK1B R102C, psPAX2 (Packaging vector), and pMD2 (Envelope vector) into HEK-293T cells.
Results: The accuracy of the intended mutation was confirmed through OE-PCR and sequencing. Expression of DYRK1B and successful gene transfer were visualized using a fluorescence microscope to detect the GFP marker. Lentiviral titer was quantified using flow cytometry, with an infection efficiency of 108 TU/ml in HEK-293T cells.
Conclusion: DYRK1B plays a crucial role in the pathogenesis of metabolic syndrome, central obesity, early-onset coronary artery disease, hypertension, type 2 diabetes, and adipogenesis, suggesting its potential as a target for therapeutic interventions. Lentiviruses carrying the DYRK1B R102C mutation offer significant advantages for both in vitro and in vivo research on metabolic syndrome. This study showcases the successful application of recombinant lentiviral vectors for gene transfer into eukaryotic cells.
Tahereh Panahi, Leila Asadpour, Najmeh Ranji,
Volume 19, Issue 1 (4-2025)
Abstract
Background and Objectives: Infections caused by extended-spectrum β-lactamase (ESBL) producing Pseudomonas aeruginosa are a serious concern in hospitals around the world. Many of β-lactamase genes are carried by integrons. This study was conducted to investigate the frequency of β-lactamase genes and characterize class 1 integrons in multidrug-resistant P. aeruginosa strains in Guilan, northern Iran.
Methods: A total of 110 P. aeruginosa isolates were collected from different hospitals in 2021 and identified using standard microbiological methods. The isolates were studied for their antibacterial susceptibility and ESBL-producing ability by disk diffusion. All ESBL-producing isolates were investigated for the presence of β-lactamase resistant and integron genes by polymerase chain reaction (PCR). Gene cassette screening was done based on sequence analysis of class 1 integrons.
Results: Based on antibiotic susceptibility testing, 40 isolates (37.4%) were ESBL producers. The frequency of β-lactamase genes including VIM, SIM, IMP, SPM, and OXA2 was 10.3%, 1.9%, 20.6%, 14%, and 4%, respectively. GIM and OXA 10 genes were not found in any of the strains. Furthermore, int1 gene was identified among 37 isolates (34.6%). The sequencing results of int1 showed 12 different types of gene cassettes among 13 strains. In this assay, blaOXA-2 was the only bla gene identified in int1.
Conclusion: The results of the present study showed that integrons carrying multidrug resistance genes are highly prevalent in P. aeruginosa isolates and ESBL genes were also observed in these strains. Therefore, constant monitoring of drug resistance, especially ESBL producers, is critical to disease management in clinical settings.
